 ,Position,Score,Strand,Site,Up category,Down category,Up relative position,Down relative position,Genes,Name,Start,Stop,Strand,Locus tag,Protein id,Product,Note
@,1753899,25.14067979039738,Forward,ATACTGTATATAAAAACAGTAT,Operator,None,19,0,Down
 , , , , , , , , ,Up,VP1428,1753880,1753662,Reverse,null,BAC59691.1,hypothetical protein,similar to GB:AAF94526.1 (AE004216) percent identity 59 in 67 aa
@,1156496,23.4372955143476,Forward,TACCTGTATATAAATACAGTAT,Operator,None,9,0,Down
 , , , , , , , , ,Up,VP2034,1156487,1155795,Reverse,null,BAC60297.1,hypothetical protein,similar to GB:AAG04060.1 (AE004502) percent identity 33 in 165 aa
 , , , , , , , , , ,VP2035,1155790,1154387,Reverse,null,BAC60298.1,hypothetical protein,similar to GB:AAG04059.1 (AE004502) percent identity 30 in 476 aa
 , , , , , , , , , ,VP2036,1154380,1151306,Reverse,null,BAC60299.1,putative DNA polymerase III alpha chain,similar to GB:AAG04058.1 (AE004502) percent identity 50 in 1029 aa
@,793266,23.422397489707144,Forward,ATACTGGCTTTTTATACAGTTT,Operator,None,27,0,Down
 , , , , , , , , ,Up,VP2379,793239,792943,Reverse,null,BAC60642.1,DNA damage-inducible gene in SOS regulon, dependent on cyclic AMP and H-NS,similar to GB:AAF95470.1 (AE004303) percent identity 77 in 102 aa
@,1027606,23.066523101962396,Forward,TTACTGTTCATTTATACAGTTT,None,Operator,0,86,Down,VP2149,1027692,1029656,Forward,null,BAC60412.1,DNA topoisomerase III,similar to GB:AAF95191.1 (AE004278) percent identity 79 in 643 aa
 , , , , , , , , ,Up
@,1669938,22.16927674231394,Forward,GCACTGTATTTATATACAGTTC,Intergenic,None,383,0,Down
 , , , , , , , , ,Up,VP1510,1669555,1667894,Reverse,null,BAC59773.1,iron-sulfur cluster-binding protein,similar to GB:AAF94670.1 (AE004230) percent identity 74 in 553 aa
 , , , , , , , , , ,VP1511,1667884,1667258,Reverse,null,BAC59774.1,putative formate dehydrogenase-specific chaperone,similar to GB:AAF94669.1 (AE004230) percent identity 55 in 206 aa
 , , , , , , , , , ,VP1512,1667187,1666984,Reverse,null,BAC59775.1,hypothetical protein,similar to GB:AAF94668.1 (AE004229) percent identity 65 in 66 aa
 , , , , , , , , , ,VP1513,1666973,1664118,Reverse,null,BAC59776.1,putative formate dehydrogenase large subunit,similar to EMB:CAD16080.1 (AL646069) percent identity 60 in 967 aa
 , , , , , , , , , ,VP1514,1664106,1663498,Reverse,null,BAC59777.1,formate dehydrogenase, iron-sulfur subunit,similar to GB:AAF94667.1 (AE004229) percent identity 95 in 202 aa
 , , , , , , , , , ,VP1515,1663483,1662431,Reverse,null,BAC59778.1,formate dehydrogenase, cytochrome b556 subunit,similar to GB:AAF94666.1 (AE004229) percent identity 77 in 348 aa
@,3185308,22.069668632610323,Forward,ACACTGGATAAATGTCCAGTTT,Operator,Operator,47,123,Down,VP0093,3185431,3186339,Forward,null,BAC58356.1,conserved hypothetical protein,similar to GB:AAF93259.1 (AE004099) percent identity 77 in 301 aa
 , , , , , , , , ,Up,VP0094,3185261,3183717,Reverse,null,BAC58357.1,conserved hypothetical protein,similar to GB:AAF93260.1 (AE004099) percent identity 77 in 514 aa
 , , , , , , , , , ,VP0095,3183638,3182859,Reverse,null,BAC58358.1,ubiquinone/menaquinone biosynthesis methlytransferase UbiE,similar to GB:AAF93261.1 (AE004099) percent identity 87 in 260 aa
 , , , , , , , , , ,VP0096,3182847,3182212,Reverse,null,BAC58359.1,conserved hypothetical protein,similar to GB:AAF93262.1 (AE004099) percent identity 73 in 200 aa
@,832932,20.780900187303857,Forward,ATACTGTATTTTTAACCAGTGT,None,Operator,0,32,Down,VP2342,832964,834028,Forward,null,BAC60605.1,DNA-damage-inducible protein P,similar to GB:AAF95431.1 (AE004300) percent identity 77 in 354 aa
 , , , , , , , , , ,VP2343,832608,832841,Forward,null,BAC60606.1,hypothetical protein,unknown
 , , , , , , , , ,Up
@,2609928,20.509539979395154,Forward,ATACTGTTCTCATATACAGTAT,None,Operator,0,47,Down,VP0648,2609975,2611639,Forward,null,BAC58911.1,DNA repair protein RecN,similar to GB:AAF94014.1 (AE004170) percent identity 81 in 554 aa
 , , , , , , , , ,Up
@,2609906,20.18685018058498,Forward,TTACTGTATAAAGAAACAGTAT,None,Operator,0,69,Down,VP0648,2609975,2611639,Forward,null,BAC58911.1,DNA repair protein RecN,similar to GB:AAF94014.1 (AE004170) percent identity 81 in 554 aa
 , , , , , , , , ,Up
@,421086,20.03708851682547,Forward,ATACTGGACAAAAAAACAGTAA,Operator,None,65,0,Down
 , , , , , , , , ,Up,VP2712,421021,418199,Reverse,null,BAC60975.1,excinuclease ABC, subunit A,similar to GB:AAF93567.1 (AE004127) percent identity 91 in 939 aa
 , , , , , , , , , ,VP2713,418131,416353,Reverse,null,BAC60976.1,hypothetical protein,similar to GB:AAF93566.1 (AE004127) percent identity 65 in 593 aa
@,1949237,19.804796845260686,Forward,CTACTGTATACACATACAGCAT,None,Operator,0,40,Down,VP1264,1949277,1949669,Forward,null,BAC59527.1,hypothetical protein,similar to GB:AAF94350.1 (AE004199) percent identity 43 in 102 aa
 , , , , , , , , ,Up
@,1078864,18.56038011205711,Forward,AAGGTGTATATATATACAGCGC,None,Operator,0,75,Down,VP2100,1078939,1080969,Forward,null,BAC60363.1,excinuclease ABC, subunit B,similar to PDB:1EYY percent identity 87 in 676 aa
 , , , , , , , , ,Up
@,594096,17.755654838843956,Forward,ACACTGTATGAATCAACAGTAT,None,Operator,0,111,Down,VP2550,594207,595250,Forward,null,BAC60813.1,RecA protein,similar to GB:AAC43291.1 (U10162) percent identity 91 in 347 aa
 , , , , , , , , ,Up
@,1730882,17.63283622556202,Forward,GTGCTGGTTAATCAGACAGTTA,Isolated,Isolated,0,0,Down
 , , , , , , , , ,Up
@,1249994,17.24921909650375,Forward,GGACTGTAAAAATAACCAGTAA,Operator,Intergenic,47,453,Down,VP1945,1250447,1251091,Forward,null,BAC60208.1,transcriptional regulator, LuxR family,similar to GB:AAF94372.1 (AE004201) percent identity 91 in 214 aa
 , , , , , , , , , ,VP1944,1251093,1252925,Forward,null,BAC60207.1,excinuclease ABC, subunit C,similar to GB:AAF94373.1 (AE004201) percent identity 84 in 606 aa
 , , , , , , , , , ,VP1943,1252972,1253529,Forward,null,BAC60206.1,CDP-diacylglycerol-glycerol-3-phosphate3-phosphatidyltransferase,similar to GB:AAF94374.1 (AE004201) percent identity 90 in 185 aa
 , , , , , , , , ,Up,VP1946,1249947,1247584,Reverse,null,BAC60209.1,DNA polymerase II,similar to GB:AAF94371.1 (AE004201) percent identity 75 in 787 aa
@,201307,17.044007058038495,Forward,ATACTGGATGGACATACAAGGC,None,Intragenic,0,420,Down,VP2901,200887,202104,Forward,null,BAC61164.1,hypothetical protein,unknown
 , , , , , , , , ,Up
@,138196,16.94637919998535,Forward,TTACTGGATATACTCACAGTTA,Operator,Operator,1,46,Down,VP2945,138242,138862,Forward,null,BAC61208.1,LexA repressor,similar to GB:AAF93270.1 (AE004100) percent identity 84 in 209 aa
 , , , , , , , , ,Up,VP2946,138195,138091,Reverse,null,BAC61209.1,hypothetical protein,unknown
@,2985587,16.939417008508713,Forward,ACCCTGGATGGGTAAACAGTAC,Isolated,Isolated,0,0,Down
 , , , , , , , , ,Up,VP0308,2985695,2981928,Reverse,null,BAC58571.1,conserved hypothetical protein,similar to GB:AAF95688.1 (AE004323) percent identity 54 in 1258 aa
@,138216,16.77163386224766,Forward,TAACTGTATAAAAAGACAGGTG,Operator,Operator,21,26,Down,VP2945,138242,138862,Forward,null,BAC61208.1,LexA repressor,similar to GB:AAF93270.1 (AE004100) percent identity 84 in 209 aa
 , , , , , , , , ,Up,VP2946,138195,138091,Reverse,null,BAC61209.1,hypothetical protein,unknown
@,2187085,16.716832189274893,Forward,GAACTGGATAGACATCCAGTCC,Operator,None,43,0,Down
 , , , , , , , , ,Up,VP1051,2187042,2186428,Reverse,null,BAC59314.1,holliday junction DNA helicase RuvA,similar to GB:AAF94994.1 (AE004260) percent identity 83 in 204 aa
 , , , , , , , , , ,VP1052,2186406,2185402,Reverse,null,BAC59315.1,holliday junction DNA helicase RuvB,similar to GB:AAF94993.1 (AE004260) percent identity 92 in 334 aa
 , , , , , , , , , ,VP1050,2187498,2187121,Reverse,null,BAC59313.1,hypothetical protein,similar to GB:AAK86341.1 (AE007988) percent identity 29 in 117 aa
@,896010,16.362753608754975,Forward,TTGCTGTTTATTTAGAAAGGTT,Isolated,Isolated,0,0,Down
 , , , , , , , , ,Up
@,1002427,16.274672433572103,Forward,TTACTGAGAAAATATTCAGCAT,Isolated,Isolated,0,0,Down
 , , , , , , , , ,Up
@,1189968,15.9111523374733,Forward,ATATTGTTTTTATATACAGCGA,Operator,Operator,124,227,Down,VP2003,1190195,1190869,Forward,null,BAC60266.1,hypothetical protein,similar to GB:AAK87648.1 (AE008108) percent identity 26 in 187 aa
 , , , , , , , , , ,VP2002,1190895,1191599,Forward,null,BAC60265.1,hypothetical protein,similar to DBJ:BAB07674.1 (AP001520) percent identity 29 in 239 aa
 , , , , , , , , , ,VP2001,1191604,1192095,Forward,null,BAC60264.1,conserved hypothetical protein,similar to EMB:CAD16143.1 (AL646070) percent identity 48 in 135 aa
 , , , , , , , , , ,VP2000,1192099,1192659,Forward,null,BAC60263.1,putative ribosomal-protein-alanine N-acetyltransferase,similar to DBJ:BAB80563.1 (AP003188) percent identity 26 in 152 aa
 , , , , , , , , ,Up,VP2004,1189844,1189311,Reverse,null,BAC60267.1,hypothetical protein,unknown
@,2583333,15.605154354631779,Forward,ATCCTGTAAAGGTAAAAAGTAA,Operator,None,7,0,Down
 , , , , , , , , ,Up,VP0672,2583326,2582037,Reverse,null,BAC58935.1,conserved hypothetical protein,similar to GB:AAF95422.1 (AE004299) percent identity 88 in 427 aa
@,1503848,15.520008969233796,Forward,ATGCTGGGAGAATAGAAAGGAT,Operator,Operator,25,162,Down,VP1667,1504010,1504903,Forward,null,BAC59930.1,putative outer membrane protein PopN,similar to GB:AAC45939.1 (AF010150) percent identity 40 in 265 aa
 , , , , , , , , ,Up,VP1668,1503823,1502501,Reverse,null,BAC59931.1,ATP synthase in type III secretion system,similar to GB:AAB86534.1 (AF010151) percent identity 80 in 424 aa
@,2147129,15.310800003636736,Forward,AAACTGTTAATATTTAAAGCAA,Operator,None,61,0,Down
 , , , , , , , , ,Up,VP1087,2147068,2145059,Reverse,null,BAC59350.1,hypothetical protein,similar to DBJ:BAB74175.1 (AP003589) percent identity 22 in 321 aa
 , , , , , , , , , ,VP1086,2147627,2147169,Reverse,null,BAC59349.1,hypothetical protein,similar to DBJ:BAB52479.1 (AP003008) percent identity 41 in 130 aa
@,1340288,15.136889151780945,Forward,AGTCTGTTTATTTATACAGGTG,Operator,Operator,10,272,Down,VP1864,1340560,1340973,Forward,null,BAC60126.1,conserved hypothetical protein,similar to GB:AAF96307.1 (AE004375) percent identity 91 in 137 aa
 , , , , , , , , ,Up,VP1865,1340278,1339316,Reverse,null,BAC60128.1,site-specific recombinase IntIA,similar to GB:AAK02076.1 (AY014399) percent identity 99 in 320 aa
@,2263249,14.899052964290846,Forward,GTGCTTTATTTTCTTACAGTAA,Operator,None,5,0,Down
 , , , , , , , , ,Up,VP0982,2263244,2261496,Reverse,null,BAC59245.1,transport ATP-binding protein MsbA,similar to GB:AAF95026.1 (AE004263) percent identity 79 in 582 aa
 , , , , , , , , , ,VP0983,2261490,2260483,Reverse,null,BAC59246.1,tetraacyldisaccharide 4'-kinase,similar to GB:AAF95025.1 (AE004263) percent identity 70 in 335 aa
@,460264,14.836942420014566,Forward,AAAATGGGTATTTAAACAGGTT,None,Intergenic,0,358,Down,VP2680,460622,460738,Forward,null,BAC60943.1,hypothetical protein,unknown
 , , , , , , , , , ,VP2679,460785,461537,Forward,null,BAC60942.1,ribosomal large subunit pseudouridine synthase A,similar to GB:AAF95647.1 (AE004320) percent identity 72 in 247 aa
 , , , , , , , , , ,VP2678,461572,462534,Forward,null,BAC60941.1,2-hydroxyacid dehydrogenase family protein,similar to GB:AAF95646.1 (AE004320) percent identity 71 in 318 aa
 , , , , , , , , ,Up,VP2681,460456,459191,Reverse,null,BAC60944.1,putative manganese transporter,similar to GB:AAK02765.1 (AE006104) percent identity 51 in 402 aa
@,1268809,14.463046888874835,Forward,TTGGTGGAAATATAGTCAGTTT,Operator,Operator,118,192,Down,VP1932,1269001,1271637,Forward,null,BAC60195.1,DNA gyrase, subunit A,similar to DBJ:BAA77788.1 (AB023569) percent identity 99 in 878 aa
 , , , , , , , , , ,VP1931,1271675,1272382,Forward,null,BAC60194.1,putaive YfrE protein,similar to EMB:CAA53695.1 (X76082) percent identity 33 in 219 aa
 , , , , , , , , , ,VP1930,1272415,1272966,Forward,null,BAC60193.1,hypothetical protein,unknown
 , , , , , , , , ,Up,VP1933,1268691,1267984,Reverse,null,BAC60196.1,3-demethylubiquinone-9 3-methyltransferase,similar to GB:AAF94416.1 (AE004205) percent identity 84 in 235 aa
@,200876,14.172389351963687,Forward,AAGGTGGGAAAATGAACAGGAA,Operator,Operator,181,11,Down,VP2901,200887,202104,Forward,null,BAC61164.1,hypothetical protein,unknown
 , , , , , , , , ,Up,VP2902,200695,199562,Reverse,null,BAC61165.1,hypothetical protein,unknown
@,2016659,14.158441398639603,Forward,AAGCTGGAAATAAAAAGAGTTT,Isolated,Isolated,0,0,Down
 , , , , , , , , ,Up
@,1613838,14.008378485073248,Forward,AAGCTGGGTATCCGTACAGGTG,Intergenic,Intragenic,411,306,Down,VP1575,1613532,1614368,Forward,null,BAC59838.1,putative major phage capsid protein,unknown
 , , , , , , , , ,Up,VP1576,1613427,1613323,Reverse,null,BAC59839.1,hypothetical protein,unknown
@,779418,13.937656502865192,Forward,AAACTGGAAATTCGTACCGGAA,Operator,Operator,207,30,Down,VP2392,779388,779720,Forward,null,BAC60655.1,methionyl-tRNA synthetase-related protein,similar to GB:AAG58207.1 (AE005536) percent identity 85 in 110 aa
 , , , , , , , , ,Up,VP2393,779211,778213,Reverse,null,BAC60656.1,transcriptional regulator, LacI family,similar to GB:AAF95481.1 (AE004303) percent identity 72 in 329 aa
@,3274024,13.91921720628946,Forward,TTACTGACATAACATACAGCTA,Intragenic,None,416,0,Down
 , , , , , , , , ,Up,VP0016,3274440,3274024,Reverse,null,BAC58279.1,hypothetical protein,similar to GB:AAF93194.1 (AE004094) percent identity 45 in 124 aa
 , , , , , , , , , ,VP0017,3274008,3273892,Reverse,null,BAC58280.1,hypothetical protein,similar to GB:AAF93195.1 (AE004094) percent identity 70 in 34 aa
@,2890075,13.790565521078737,Forward,TTAGTGGGAGAACAAACAGCTA,Operator,None,75,0,Down
 , , , , , , , , ,Up,VP0400,2890000,2889185,Reverse,null,BAC58663.1,putative transmembrane protein,similar to EMB:CAD16913.1 (AL646075) percent identity 31 in 284 aa
@,514333,13.608672358055586,Forward,AAACCGTTTATATGTACATCAA,Isolated,Isolated,0,0,Down
 , , , , , , , , ,Up
@,677333,13.590002224511485,Forward,TAACTGGTTTTAGGTCCAGTAC,Operator,None,176,0,Down
 , , , , , , , , ,Up,VP2480,677157,676171,Reverse,null,BAC60743.1,peptide ABC transporter, permease protein,similar to GB:AAF93785.1 (AE004147) percent identity 87 in 328 aa
 , , , , , , , , , ,VP2481,676168,675143,Reverse,null,BAC60744.1,peptide ABC transporter, permease protein,similar to GB:AAF93784.1 (AE004147) percent identity 82 in 341 aa
 , , , , , , , , , ,VP2482,675140,674157,Reverse,null,BAC60745.1,peptide ABC transporter, ATP-binding protein,similar to GB:AAF93783.1 (AE004147) percent identity 92 in 326 aa
 , , , , , , , , , ,VP2483,674109,673114,Reverse,null,BAC60746.1,peptide ABC transporter, ATP-binding protein,similar to GB:AAF93782.1 (AE004147) percent identity 90 in 330 aa
 , , , , , , , , , ,VP2484,673050,671311,Reverse,null,BAC60747.1,endoglucanase-related protein,similar to GB:AAF93781.1 (AE004147) percent identity 69 in 568 aa
 , , , , , , , , , ,VP2485,671308,670418,Reverse,null,BAC60748.1,putative N-acetylglucosamine kinase,similar to GB:AAF93780.1 (AE004147) percent identity 76 in 288 aa
 , , , , , , , , , ,VP2486,670409,668490,Reverse,null,BAC60749.1,beta-N-hexosaminidase,similar to GB:AAA65915.1 (U24658) percent identity 93 in 637 aa
 , , , , , , , , , ,VP2487,668405,665997,Reverse,null,BAC60750.1,N,N'-diacetylchitobiose phosphorylase,similar to GB:AAF93778.1 (AE004146) percent identity 84 in 802 aa
@,1211206,13.542526757475844,Forward,TTACTTTTTATAAAACCATTTT,Operator,Operator,300,261,Down,VP1981,1211467,1213563,Forward,null,BAC60244.1,putative methyl-accepting chemotaxis protein,similar to GB:AAG06042.1 (AE004694) percent identity 35 in 597 aa
 , , , , , , , , , ,VP1982,1210936,1211025,Forward,null,BAC60245.1,hypothetical protein,unknown
 , , , , , , , , ,Up,VP1983,1210906,1210229,Reverse,null,BAC60246.1,putaive two-component response regulator,similar to GB:AAF85135.1 (AE004044) percent identity 46 in 219 aa
