 ,Position,Score,Strand,Site,Up category,Down category,Up relative position,Down relative position,Genes,Name,Start,Stop,Strand,Locus tag,Protein id,Product,Note
@,3694508,26.252303240945096,Forward,GTACTGTATGAATATACAGTAA,Operator,Operator,175,42,Down,sulA,3694550,3695059,Forward,STM1071,NP_460045.1,SOS cell division inhibitor,suppressor of lon (SW:SULA_SALTY); inhibitor of cell division and FtsZ ring formation upon DNA damage/inhibition; HslVU and Lon involved in its turnover
 , , , , , , , , ,Up,yccR,3694333,3693728,Reverse,STM1072,NP_460046.1,DNA transformation protein,null
@,3608952,26.10533449447128,Forward,TAACTGTATATATATCCAGTAT,None,Operator,0,40,Down,dinI,3608992,3609237,Forward,STM1162,NP_460133.1,DNA damage-inducible protein I,similar to Escherichia coli damage-inducible protein I (AAC74145.1); inhibits UmuD processing
 , , , , , , , , ,Up
@,398211,26.095402578752793,Forward,ATGCTGTGAGTATATACAGTTA,Operator,None,27,0,Down
 , , , , , , , , ,Up,lexA,398184,397576,Reverse,STM4237,NP_463102.1,LexA repressor,Represses a number of genes involved in the response to DNA damage
 , , , , , , , , , ,dgkA,398661,398293,Reverse,STM4236,NP_463101.1,diacylglycerol kinase,similar to Escherichia coli diacylglycerol kinase (AAC77012.1)
@,419670,26.060886585000695,Forward,ATACTGTATGCATATACAGTTA,Operator,Intergenic,225,351,Down,null,420021,420308,Forward,STM4218,NP_463083.1,inner membrane protein,null
 , , , , , , , , , ,null,420311,420916,Forward,STM4217,NP_463082.1,soluble lytic murein transglycosylase,null
 , , , , , , , , , ,null,420929,421243,Forward,STM4216,NP_463081.1,inner membrane protein,null
 , , , , , , , , ,Up,null,419445,419098,Reverse,STM4219.S,NP_463084.2,cytoplasmic protein,null
@,3713683,26.009656891762805,Forward,ATACTGTATATACAAACAGTTA,Intergenic,Operator,391,36,Down,null,3713719,3713910,Forward,STM1056,NP_460030.1,MsgA-like protein,null
 , , , , , , , , ,Up,pepN,3713292,3710680,Reverse,STM1057,NP_460031.1,aminopeptidase N,similar to Escherichia coli aminopeptidase N (AAC74018.1)
@,1881433,24.87573521533863,Forward,ATACTGTATGAGCATACAGTAT,None,Intragenic,0,497,Down,ygaD,1880936,1881433,Forward,STM2830,NP_461751.1,competence damage-inducible protein A,null
 , , , , , , , , , ,recA,1881518,1882579,Forward,STM2829,NP_461750.1,recombinase A,catalyzes the hydrolysis of ATP in the presence of single-stranded DNA, the ATP-dependent uptake of single-stranded DNA by duplex DNA, and the ATP-dependent hybridization of homologous single-stranded DNAs
 , , , , , , , , ,Up
@,2034217,24.105265528755144,Forward,AAACTGGTTTTTTATACAGTAA,Operator,None,48,0,Down
 , , , , , , , , ,Up,recN,2034169,2032508,Reverse,STM2684,NP_461614.1,recombination and repair protein,similar to Escherichia coli protein used in recombination and DNA repair (AAC75665.1)
@,2091611,23.77350863783766,Forward,ATACTGTGTTTATATACAGTGG,None,Operator,0,40,Down,null,2091651,2091884,Forward,STM2621,NP_461556.1,hypothetical protein,null
 , , , , , , , , ,Up
@,4499648,23.724741802821036,Forward,ATACTGTTTAAGTGTACAGTAT,Operator,Operator,15,235,Down,yafK,4499883,4500623,Forward,STM0312,NP_459310.1,periplasmic protein,null
 , , , , , , , , ,Up,dinP,4499633,4498578,Reverse,STM0313,NP_459311.1,DNA polymerase IV,involved in translesion DNA polymerization with beta clamp of polymerase III; belongs to Y family of polymerases; does not contain proofreading function
@,3889038,23.71800966970911,Forward,ATACTGTAAATAAATACAGTGT,Intergenic,Intragenic,324,211,Down,null,3888827,3889522,Forward,STM0898,NP_459874.1,transcriptional regulator,null
 , , , , , , , , ,Up,null,3888714,3888460,Reverse,STM0898A,NP_459875.1,hypothetical protein,null
@,381294,23.44398032788186,Forward,ATACTGTATATTCAAACAGGTT,Operator,Operator,147,101,Down,uvrA,381395,384220,Forward,STM4254,NP_463119.1,excinuclease ABC subunit A,The UvrABC repair system catalyzes the recognition and processing of DNA lesions. UvrA is an ATPase and a DNA-binding protein. A damage recognition complex composed of 2 uvrA and 2 uvrB subunits scans DNA for abnormalities. When the presence of a lesion has been verified by uvrB, the uvrA molecules dissociate
 , , , , , , , , ,Up,ssb,381147,380617,Reverse,STM4256,NP_463121.1,single-stranded DNA-binding protein,binds to single stranded DNA and PriA helcase facilitate replication restart
@,3467401,23.428086792230626,Forward,ATACTGGATGAATAACCAGTTA,None,Operator,0,7,Down,null,3467408,3468316,Forward,STM1309,NP_460275.1,nucleotide excision repair endonuclease,3' incision activity; acts with UvrC
 , , , , , , , , ,Up
@,3993073,23.00138050882091,Forward,ATACTGGATGAAAAAACAGTAA,Operator,None,73,0,Down
 , , , , , , , , ,Up,uvrB,3993000,3990979,Reverse,STM0798,NP_459776.1,excinuclease ABC subunit B,The UvrABC repair system catalyzes the recognition and processing of DNA lesions. The beta-hairpin of the Uvr-B subunit is inserted between the strands, where it probes for the presence of a lesion
 , , , , , , , , , ,null,3990893,3990738,Reverse,STM0799.1N,null,null,null
@,859225,22.514789859542763,Forward,GTACTGTATAAATGAACAGTAA,Operator,Intergenic,125,398,Down,ivbL,859623,859721,Forward,STM3797,NP_462696.1,ilvB operon leader peptide,similar to Escherichia coli ilvB operon leader peptide (AAC76695.1)
 , , , , , , , , ,Up,ysdA,859100,858986,Reverse,STM3797A,null,null,null
@,1987256,22.124299457703934,Forward,ATACTGTAAATATAAACAGTGG,None,Operator,0,62,Down,null,1987318,1987506,Forward,STM2728,NP_461655.1,hypothetical protein,null
 , , , , , , , , ,Up
@,2775815,21.933777551654504,Forward,CTACTGTATATAAAAACAGTAT,None,Operator,0,36,Down,umuD,2775851,2776270,Forward,STM1998,NP_460949.1,DNA polymerase V subunit UmuD,binds with UmuC protein to form functional DNA pol V (UmuD'2UmuC); involved in translesion polymerization
 , , , , , , , , , ,umuC,2776273,2777541,Forward,STM1997,NP_460948.1,DNA polymerase V subunit UmuC,binds processed UmuD protein to form functional DNA pol V (UmuD'2UmuC); involved in translesion polymerization
 , , , , , , , , , ,null,2775563,2775724,Forward,STM1999,NP_460950.1,cytoplasmic protein,null
 , , , , , , , , ,Up
@,2721519,21.77560471932607,Forward,ATACTGTACATTCATACAGCAT,None,Operator,0,42,Down,sbmC,2721561,2722028,Forward,STM2061,NP_461006.1,DNA gyrase inhibitor,similar to DNA gyrase inhibitory protein (SW:GYRI_SALTY)
 , , , , , , , , ,Up
@,3455208,21.056110053060355,Forward,ATACTGTATGAATTGACAGTTT,None,Operator,0,35,Down,ydjM,3455243,3455830,Forward,STM1321,NP_460287.2,hypothetical protein,LexA-regulated gene
 , , , , , , , , ,Up
@,615981,20.870528765072667,Forward,AAACTGTACATACATACAGTCA,Operator,Operator,184,34,Down,null,616015,616944,Forward,STM4032,NP_462912.1,acetyl esterase,similar to Escherichia coli lipase  (AAC73578.1)
 , , , , , , , , , ,null,617030,617341,Forward,STM4031,NP_462911.1,cytoplasmic protein,null
 , , , , , , , , , ,null,617356,617784,Forward,STM4030.S,NP_462910.2,cytoplasmic protein,null
 , , , , , , , , ,Up,null,615797,615486,Reverse,STM4032.2N,NP_945170.1,hypothetical protein,null
 , , , , , , , , , ,null,615485,615195,Reverse,STM4033,NP_462913.2,regulatory protein,merR family
@,681712,20.747582587140027,Forward,GTGCTGTATAAACGTCCAGTTT,Operator,None,44,0,Down
 , , , , , , , , ,Up,yigN,681668,680238,Reverse,STM3969,NP_462854.1,DNA recombination protein RmuC,YigN; nuclease that may cleave DNA structures arising during the recombination of short-inverted repeats and thereby prevents the inversion of the internal sequence; transcription is induced by DNA-damaging agents such as nalidixic acid or mitomycin C in a LexA-dependent manner
 , , , , , , , , , ,ubiE,680142,679387,Reverse,STM3970,NP_462855.1,ubiquinone/menaquinone biosynthesis methyltransferase,Catalyzes the carbon methylation reaction in the biosynthesis of ubiquinone
 , , , , , , , , , ,yigP,679377,678772,Reverse,STM3971,NP_462856.1,inner membrane protein,null
@,701997,20.339682120594077,Forward,TAACTGGGAATTTATACAGAAC,Operator,None,105,0,Down
 , , , , , , , , ,Up,uvrD,701892,699730,Reverse,STM3951,NP_462836.1,DNA-dependent helicase II,unwinds DNA duplexes with 3' to 5' polarity with respect to the bound strand and initiates unwinding most effectively when a single-stranded region is present; involved in the post-incision events of nucleotide excision repair and methyl-directed mismatch repair.
@,3861969,20.239596147840956,Forward,TTGCTGTATTTTTATTCAGTAG,Operator,Operator,167,22,Down,null,3861947,3862471,Forward,STM0924,NP_459901.1,CuZn superoxide dismutase,similar to Escherichia coli superoxide dismutase precursor; CuZn (AAC74718.1)
 , , , , , , , , ,Up,null,3861802,3858407,Reverse,STM0925.S,NP_459902.2,host-specificity protein,null
 , , , , , , , , , ,null,3858363,3855991,Reverse,STM0926,NP_459903.1,minor tail protein,similar to Escherichia coli membrane protein (AAC74454.1)
@,1987271,19.999972485384408,Forward,ACAGTGGTTATATGTACAGTAT,None,Operator,0,47,Down,null,1987318,1987506,Forward,STM2728,NP_461655.1,hypothetical protein,null
 , , , , , , , , ,Up
@,4755928,19.902055908112228,Forward,ACGCTGGGAAGATAAACAGTAT,Isolated,Isolated,0,0,Down
 , , , , , , , , ,Up
@,2034195,19.717425082302675,Forward,TGACTGTAATTAAATACAGTAT,Operator,None,26,0,Down
 , , , , , , , , ,Up,recN,2034169,2032508,Reverse,STM2684,NP_461614.1,recombination and repair protein,similar to Escherichia coli protein used in recombination and DNA repair (AAC75665.1)
@,2080492,19.525619532095252,Forward,ATACTGGTTGCATGTACAGTCA,None,Operator,0,125,Down,null,2080617,2081846,Forward,STM2636,NP_461571.1,integrase-like protein,similar to integrase in phage (gi|7467280)
 , , , , , , , , ,Up
@,2881862,19.4204885071468,Forward,ATACTGTATATAAACACAGGTA,Operator,Operator,93,38,Down,yebG,2881900,2882190,Forward,STM1882,NP_460839.1,DNA damage-inducible protein YebG,in SOS regulon; dependent on cyclic AMP and H-NS
 , , , , , , , , , ,yebF,2882258,2882611,Forward,STM1881,NP_460838.1,hypothetical protein,secreted protein; unknown function
 , , , , , , , , , ,yebE,2882705,2883364,Forward,STM1880,NP_460837.1,inner membrane protein,null
 , , , , , , , , ,Up,purT,2881769,2880591,Reverse,STM1883,NP_460840.1,phosphoribosylglycinamide formyltransferase 2,non-folate utilizing enzyme, catalyzes the production of beta-formyl glycinamide ribonucleotide from formate, ATP, and beta-GAR and a side reaction producing acetyl phosphate and ADP from acetate and ATP; involved in de novo purine biosynthesis
@,1363966,19.145808081036655,Forward,TTACTGTGTGAATATAAAGATC,None,Intragenic,0,384,Down,yhcC,1363582,1364511,Forward,STM3329,NP_462239.1,FeS oxidoreductase,null
 , , , , , , , , ,Up
@,3563136,18.66419207801334,Forward,ATGCTGAAAAGATAGACAGTTT,Operator,None,157,0,Down
 , , , , , , , , ,Up,ndh,3562979,3561675,Reverse,STM1211,NP_460181.1,respiratory NADH dehydrogenase 2,similar to Escherichia coli respiratory NADH dehydrogenase (AAC74193.1); cupric reductase
@,2691653,18.05687943687827,Forward,AAACTGTATTTATGTCCAATTC,None,Intragenic,0,457,Down,rfbN,2691196,2692140,Forward,STM2085,NP_461030.1,rhamnosyl transferase,rhamnosyltransferase RfbN (SW:RFBN_SALTY); LPS side chain defect
 , , , , , , , , , ,rfbM,2692141,2693580,Forward,STM2084,NP_461029.1,mannose-1-phosphate guanylyltransferase,mannose-1-phosphate guanylyltransferase GDP (SW:RFBM_SALTY); LPS side chain defect
 , , , , , , , , ,Up
@,1997912,17.63927835613267,Forward,ATGGTGTGTGTTTTTACAGTAG,None,Operator,0,65,Down,null,1997977,1998405,Forward,STM2714,NP_461642.1,lysis-like protein,similar to lysis protein LysB from phage P2
 , , , , , , , , , ,null,1998501,1998932,Forward,STM2712,NP_461640.1,phage tail-like protein,similar to gpR for completion of tail from phage P2
 , , , , , , , , ,Up
@,1036059,17.60741885059944,Forward,ACGCTGTATGTTTGTACGGGAA,Isolated,Isolated,0,0,Down
 , , , , , , , , ,Up
@,3810643,17.396048680219035,Forward,GTGCTGGTTAATCAAACAGTTG,Isolated,Isolated,0,0,Down
 , , , , , , , , ,Up
@,1811654,17.03560111876162,Forward,TTGCTGTCTAAATATCCGGGAA,Isolated,Isolated,0,0,Down
 , , , , , , , , ,Up,null,1811736,1811389,Reverse,STM2902,NP_461823.1,cytoplasmic protein,similar to STM2011 and STM2508
@,1721958,16.926761454993358,Forward,AGACAGGGTAAATGTACAGGAA,Intergenic,Operator,481,286,Down,gcvA,1722244,1723161,Forward,STM2982,NP_461901.1,DNA-binding transcriptional activator GcvA,Glycine cleavage system transcriptional activator; activates the gcvTHP operon in the presence of glycine and represses the operon in its absence
 , , , , , , , , , ,ygdD,1723180,1723575,Forward,STM2981,NP_461900.1,hypothetical protein,null
 , , , , , , , , , ,ygdI,1721670,1721897,Forward,STM2983,NP_461902.1,lipoprotein,null
 , , , , , , , , ,Up,csdA,1721477,1720272,Reverse,STM2984,NP_461903.1,cysteine sulfinate desulfinase,null
@,3820138,16.637321222084346,Forward,TTGCTGTATGGATTAACAGGAG,Operator,None,76,0,Down
 , , , , , , , , ,Up,ftsK,3820062,3816007,Reverse,STM0960,NP_459936.1,DNA translocase FtsK,DNA-binding membrane protein required for chromosome resolution and partitioning
@,2126266,16.13074431720542,Forward,ATCCTGAAGTAATATTCAGTAT,Operator,None,189,0,Down
 , , , , , , , , ,Up,null,2126077,2125532,Reverse,STM2585,NP_461520.1,transposase-like protein,similar to transposase
@,79959,16.126520884658337,Forward,TTACTGATGTTATGTACAGGTA,None,Operator,0,95,Down,yjiW,80054,80386,Forward,STM4523,NP_463382.1,endoribonuclease SymE,involved in the degradation of RNA; may be involved in the recycling of RNA during the SOS response
 , , , , , , , , , ,null,80460,81161,Forward,STM4522,NP_463381.1,inner membrane protein,null
 , , , , , , , , ,Up
@,4494567,16.11785011661874,Forward,TAGCTGGAGATGCATACGGTAT,Intragenic,Intergenic,187,436,Down,pepD,4495003,4496460,Forward,STM0316,NP_459313.1,aminoacyl-histidine dipeptidase,similar to Escherichia coli aminoacyl-histidine dipeptidase; peptidase D (AAC73341.1)
 , , , , , , , , ,Up,gpt,4494754,4494296,Reverse,STM0317,NP_459314.1,xanthine-guanine phosphoribosyltransferase,catalyzes the conversion of guanine, xanthine and, to a lesser extent, hypoxanthine to GMP, XMP and IMP, respectively
 , , , , , , , , , ,crl,4492905,4492504,Reverse,STM0319,NP_459316.1,DNA-binding transcriptional regulator Crl,involved in the expression of csgBA which is involved in curli formation; interacts with sigmaS
 , , , , , , , , , ,frsA,4494207,4492963,Reverse,STM0318,NP_459315.1,fermentation/respiration switch protein,forms a 1:1 complex with the unphosphorylated from of enzyme IIAGlc; FrsA may promote fermentation
@,1665267,15.910797320701757,Forward,TTACTTGCATTATATCCAGTTT,None,Intergenic,0,486,Down,stdA,1665753,1666313,Forward,STM3029.S,NP_461946.2,fimbrial-like protein,similar to Escherichia coli fimbrial-like protein (AAC73813.1)
 , , , , , , , , ,Up
@,3915512,15.763346529618651,Forward,ACGCTGAAAAAACAGACAGTAA,Operator,Operator,51,117,Down,null,3915629,3916840,Forward,STM0868,NP_459845.1,transport protein/regulator,similar to Escherichia coli DeoR-type transcriptional regulator (AAC73932.1)
 , , , , , , , , ,Up,null,3915461,3914841,Reverse,STM0869,NP_459846.1,regulatory protein,similar to Escherichia coli DeoR-type transcriptional regulator (AAC73933.1); TetR/Acr family
@,3748147,15.698759044823692,Forward,CCACTGTATATAAACACAGTAT,Operator,None,19,0,Down
 , , , , , , , , ,Up,null,3748128,3747895,Reverse,STM1019,NP_459994.1,hypothetical protein,null
@,1478484,15.559276306204627,Forward,GTGCTGTTTTTATAAACAATGT,Operator,Operator,55,71,Down,mug,1478555,1479061,Forward,STM3212,NP_462127.1,G/U mismatch-specific DNA glycosylase,null
 , , , , , , , , ,Up,null,1478429,1478354,Reverse,STM3213,null,tRNA-Met,null
@,3445832,15.52042180356518,Forward,CCACTGTATATAAACACAGTAA,None,Operator,0,291,Down,rfc,3446123,3447346,Forward,STM1332,NP_460298.1,O-antigen polymerase,O-antigen polymerase (SW:RFC_SALTY)
 , , , , , , , , ,Up
@,860,15.167317198061681,Forward,TTGCTGTTTATGTTAACAGAAC,Operator,Intergenic,149,487,Down,arcA,1347,2063,Forward,STM4598,NP_463454.1,two-component response regulator,similar to Escherichia coli negative response regulator of genes in aerobic pathways with sensors ArcB and CpxA (AAC77354.1); OmpR family; regulates genes in aerobic pathways
 , , , , , , , , ,Up,lasT,711,25,Reverse,STM4600,NP_463456.1,RNA methyltransferase,member of the SPOUT superfamily of methyltransferases
 , , , , , , , , , ,yjjY,1251,1111,Reverse,STM4599,NP_463455.1,inner membrane protein,null
@,2079,15.047590749970778,Forward,AAACTGTAAAAACAGCCGGTAA,None,Operator,0,251,Down,null,2330,2644,Forward,STM4597,NP_463453.1,periplasmic protein,null
 , , , , , , , , ,Up
@,1588029,14.882969079277066,Forward,ATGCTGTAACAATAAAAAGTAA,Intergenic,None,361,0,Down
 , , , , , , , , ,Up,yggX,1587668,1587393,Reverse,STM3111,NP_462027.1,hypothetical protein,null
@,2351224,14.880445588997395,Forward,TTGCTGAGTTTGCTTACAGTAA,Isolated,Isolated,0,0,Down
 , , , , , , , , ,Up,argW,2351609,2351535,Reverse,STM2394,null,tRNA-Arg,null
@,1842926,14.831687175538777,Forward,ATGCTGTAGAAATGTCAATTTT,None,Operator,0,39,Down,orgB,1842965,1843645,Forward,STM2869,NP_461790.1,needle complex export protein,oxygen-regulated invasion protein OrgB (SW:ORGB_SALTY); flagellar biosynthesis/type III secretion apparatus
 , , , , , , , , ,Up
@,4349611,14.789726302096007,Forward,TCACAGGATGAATATCCAGATC,Operator,None,283,0,Down
 , , , , , , , , ,Up,hupB,4349328,4349056,Reverse,STM0451,NP_459447.1,transcriptional regulator HU subunit beta,histone-like DNA-binding protein
@,3854134,14.708948335174787,Forward,ATACTGTATATGCATCCACCAC,Operator,Operator,232,27,Down,nanH,3854107,3855345,Forward,STM0928,NP_459905.1,neuraminidase,sialidase (SW:NANH_SALTY)
 , , , , , , , , ,Up,null,3853902,3853714,Reverse,STM0928.1c,null,null,null
@,3748766,14.47754995931667,Forward,CTGCTGTGGATTTAACCAGCTA,Operator,None,56,0,Down
 , , , , , , , , ,Up,null,3748710,3748420,Reverse,STM1018,NP_459993.1,hypothetical protein,null
 , , , , , , , , , ,null,3749099,3748788,Reverse,STM1017,NP_459992.1,hypothetical protein,null
@,3225388,14.174135675035053,Forward,AGCCTGAATTTATAAACATTTT,Operator,Operator,85,174,Down,null,3225562,3227028,Forward,STM1554,NP_460513.1,coiled-coil protein,null
 , , , , , , , , ,Up,null,3225303,3224296,Reverse,STM1555,NP_460514.1,transcriptional regulator,similar to Escherichia coli repressor of galETK operon (AAC75876.1)
@,434849,14.174095359774025,Forward,GAACTGCATAAATATAAAGGAA,None,Intragenic,0,240,Down,null,434609,435241,Forward,STM4201,NP_463066.1,phage tail protein,null
 , , , , , , , , , ,null,435244,436989,Forward,STM4200,NP_463065.1,phage tail fiber protein H,similar to Escherichia coli membrane protein (AAC74454.1)
 , , , , , , , , , ,null,436994,437599,Forward,STM4199,NP_463064.1,cytoplasmic protein,null
 , , , , , , , , ,Up
@,3231671,14.098226179856164,Forward,AGCCTGGATGTATATAAAGCGC,Isolated,Isolated,0,0,Down
 , , , , , , , , ,Up
@,2320715,14.093809028081129,Forward,GGGCTGTGTGTTAAAACAGGTA,Isolated,Isolated,0,0,Down
 , , , , , , , , ,Up
@,1959910,14.091556254112174,Forward,TTGCTGTTTTTTTAATCATTTC,Operator,Operator,120,103,Down,null,1960013,1961554,Forward,STM2758,NP_461685.1,phosphotransferase system IIC component,similar to Escherichia coli PTS system; glucose-specific IIBC component (AAC74185.1)
 , , , , , , , , ,Up,null,1959790,1958111,Reverse,STM2759,NP_461686.1,dipeptide/oligopeptide/nickel ABC-type transport system periplasmic component,similar to Escherichia coli transport protein (AAC73180.1)
@,3191302,14.089782699383376,Forward,ATTCTGCTTGTTTATCCAGTAA,Isolated,Isolated,0,0,Down
 , , , , , , , , ,Up,narY,3193008,3191464,Reverse,STM1578,NP_460537.1,nitrate reductase 2 beta subunit,similar to Escherichia coli cryptic nitrate reductase 2; beta subunit (AAC74549.1)
@,3530584,14.006382933670885,Forward,GTACAGTTTGTTTTTACATTAT,Isolated,Isolated,0,0,Down
 , , , , , , , , ,Up
@,2831863,13.999279585167814,Forward,ACACTGTCTATACTTACATGAC,None,Operator,0,71,Down,otsB,2831934,2832737,Forward,STM1929,NP_460886.1,trehalose-6-phosphate phosphatase,biosynthetic; catalyzes the formation of trehalose and phosphate from trehalose-6-phosphate; expression is increased under osmotic stress and induced during the transition to stationary phase and by decreased temperature
 , , , , , , , , , ,null,2831530,2831771,Forward,STM1930,null,null,pseudogene; frameshift
 , , , , , , , , ,Up
@,2563136,13.942011669868792,Forward,ATCCTGTGTAGTAATAAAATAA,None,Operator,0,249,Down,null,2563385,2564752,Forward,STM2196,NP_461141.1,L-serine dehydratase,similar to Escherichia coli L-serine deaminase (AAC74884.1)
 , , , , , , , , , ,null,2564757,2565146,Forward,STM2195,NP_461140.1,transcriptional regulator,null
 , , , , , , , , ,Up,null,2563168,2562281,Reverse,STM2197,NP_461142.1,phosphoserine phosphatase,similar to Escherichia coli 3-phosphoserine phosphatase (AAC77341.1)
@,4520712,13.820159922768323,Forward,ATACTGTAAGATAAATCATTTT,Intergenic,None,374,0,Down
 , , , , , , , , ,Up,null,4520338,4519598,Reverse,STM0292,NP_459290.1,RHS-like protein,similar to Escherichia coli rhsE protein in rhs element (AAC74538.1); similar to C-terminus of STM0291
@,4331057,13.722253514380707,Forward,ATACAGGATGAATATCAGGTTT,Operator,Operator,24,249,Down,ylaB,4331306,4332856,Forward,STM0468,NP_459463.1,hypothetical protein,diguanylate cyclase/phosphodiesterase domain 2
 , , , , , , , , ,Up,rpmE2,4331081,4330821,Reverse,STM0469,NP_459464.1,50S ribosomal protein L31 type B,RpmE2; there appears to be two types of ribosomal proteins L31 in bacterial genomes; some contain a CxxC motif while others do not; Bacillus subtilis has both types; the proteins in this cluster do not have the CXXC motif; RpmE is found in exponentially growing Bacilli while YtiA was found after exponential growth; expression of ytiA is controlled by a zinc-specific transcriptional repressor; RpmE contains one zinc ion and a CxxC motif is responsible for this binding; forms an RNP particle along with proteins L5, L18, and L25 and 5S rRNA; found crosslinked to L2 and L25 and EF-G; may be near the peptidyltransferase site of the 50S ribosome
 , , , , , , , , , ,rpmJ,4330815,4330675,Reverse,STM0470,NP_459465.1,50S ribosomal protein L36,smallest protein in the large subunit; similar to what is found with protein L31 and L33 several bacterial genomes contain paralogs which may be regulated by zinc; the protein from Thermus thermophilus has a zinc-binding motif and contains a bound zinc ion; the proteins in this group do not have the motif
@,3702366,13.71879953198396,Forward,TCGCAGGATAAATATTCATTAA,Operator,None,118,0,Down
 , , , , , , , , ,Up,pqiB,3702248,3700608,Reverse,STM1064,NP_460038.1,paraquat-inducible protein B,similar to Escherichia coli paraquat-inducible protein B (AAC74037.1)
@,926339,13.707850155783929,Forward,TTGCTGTAAAGCCAAACAGTAG,Isolated,Isolated,0,0,Down
 , , , , , , , , ,Up
@,3970289,13.707634991712712,Forward,GTACTGTATAAACAGCCACTAT,Operator,None,14,0,Down
 , , , , , , , , ,Up,dinG,3970275,3968131,Reverse,STM0821,NP_459799.1,ATP-dependent DNA helicase DinG,helicase involved in DNA repair and perhaps also replication
 , , , , , , , , , ,ybiB,3968101,3967127,Reverse,STM0822,NP_459800.1,glycosyl transferase family protein,similar to Escherichia coli enzyme (AAC73887.1)
@,1665331,13.64683945547101,Forward,ATGTTTTGTAAATATCCAGTGT,None,Intergenic,0,422,Down,stdA,1665753,1666313,Forward,STM3029.S,NP_461946.2,fimbrial-like protein,similar to Escherichia coli fimbrial-like protein (AAC73813.1)
 , , , , , , , , ,Up
@,1159977,13.613085219149468,Forward,ATGCTGGAAAGTTGTAGAGAAT,Isolated,Isolated,0,0,Down
 , , , , , , , , ,Up,null,1160403,1159498,Reverse,STM3532,NP_462433.1,dihydrodipicolinate synthetase,similar to Escherichia coli lyase/synthase (AAC73371.1)
