 ,Position,Score,Strand,Site,Up category,Down category,Up relative position,Down relative position,Genes,Name,Start,Stop,Strand,Locus tag,Protein id,Product,Note
@,2787350,27.932013256575782,Forward,ATACTGTATATATAAACAGTAT,None,Operator,0,247,Down,null,2787597,2788673,Forward,Ent638_2581,YP_001177300.1,acyltransferase 3,PFAM: acyltransferase 3; KEGG: ecc:c0970 hypothetical protein
 , , , , , , , , ,Up
@,1626447,27.701058213984616,Forward,TTACTGTATGAATATACAGTAA,Operator,Operator,14,198,Down,null,1626645,1627271,Forward,Ent638_1471,YP_001176202.1,regulator of competence-specific genes,PFAM: TfoX, N-terminal domain protein; TfoX, C-terminal domain protein; KEGG: stm:STM1072 putative DNA transformation protein
 , , , , , , , , ,Up,null,1626433,1625918,Reverse,Ent638_1470,YP_001176201.1,SOS cell division inhibitor,PFAM: cell division inhibitor SulA; KEGG: ecc:c1095 cell division inhibitor
@,3807322,27.088036868296516,Forward,ATACTGTATAAATAAACAGTAT,Isolated,Isolated,0,0,Down
 , , , , , , , , ,Up,null,3807346,3806864,Reverse,Ent638_3504,YP_001178213.1,DinI family protein,PFAM: DinI family protein; KEGG: spt:SPA2588 hypothetical protein
@,3459507,26.027972498242864,Forward,ATACTGTATAGTCATACAGTAT,Operator,None,72,0,Down
 , , , , , , , , ,Up,recA,3459435,3458377,Reverse,Ent638_3174,YP_001177889.1,recombinase A,catalyzes the hydrolysis of ATP in the presence of single-stranded DNA, the ATP-dependent uptake of single-stranded DNA by duplex DNA, and the ATP-dependent hybridization of homologous single-stranded DNAs
 , , , , , , , , , ,recX,3458309,3457809,Reverse,Ent638_3173,YP_001177888.1,recombination regulator RecX,binds RecA and inhibits RecA-mediated DNA strand exchange and ATP hydrolysis and coprotease activities
@,2029203,25.721668991806116,Forward,TAACTGTATTTATATACAGTTA,Operator,None,121,0,Down
 , , , , , , , , ,Up,null,2029082,2028795,Reverse,Ent638_1869,YP_001176597.1,antibiotic biosynthesis monooxygenase,PFAM: Antibiotic biosynthesis monooxygenase; KEGG: rru:Rru_A0389 antibiotic biosynthesis monooxygenase
@,2069708,25.490098641042746,Forward,ATACTGTATTTATATACAGCTA,Intergenic,Operator,328,39,Down,null,2069747,2070181,Forward,Ent638_1907,YP_001176634.1,putative prophage repressor,PFAM: peptidase S24, S26A and S26B; KEGG: sbo:SBO_1889 UmuD
 , , , , , , , , ,Up,null,2069380,2068454,Reverse,Ent638_1906,YP_001176633.1,AraC family transcriptional regulator,PFAM: helix-turn-helix- domain containing protein, AraC type; AraC protein, arabinose-binding/dimerisation; KEGG: ppu:PP_3022 transcriptional regulator, AraC family
 , , , , , , , , , ,null,2068375,2067728,Reverse,Ent638_1905,YP_001176632.1,lysine exporter protein LysE/YggA,PFAM: Lysine exporter protein (LYSE/YGGA); KEGG: pfl:PFL_3022 transporter, LysE family
@,3371034,25.352880983756354,Forward,ATACTGTATAGAAATACAGTTA,None,Operator,0,47,Down,null,3371081,3372742,Forward,Ent638_3096,YP_001177811.1,recombination and repair protein,TIGRFAM: DNA repair protein RecN; PFAM: SMC domain protein; KEGG: stt:t2638 DNA repair protein
 , , , , , , , , ,Up
@,1483580,25.290521310637253,Forward,GTACTGTATATATAAACAGTAA,None,Operator,0,52,Down,null,1483632,1483802,Forward,Ent638_1351,YP_001176083.1,hypothetical protein,KEGG: spt:SPA2589 hypothetical protein
 , , , , , , , , ,Up
@,1153938,24.076652961607344,Forward,ATACTGTATATATACACAGTAA,None,Operator,0,37,Down,null,1153975,1154361,Forward,Ent638_1055,YP_001175788.1,DNA polymerase V subunit,KEGG: stm:STM2230.1c DNA polymerase V subunit
 , , , , , , , , ,Up
@,2404938,23.954458348011908,Forward,ATACTGTTTTTACATACAGTAG,Operator,None,14,0,Down
 , , , , , , , , ,Up,null,2404924,2404505,Reverse,Ent638_2213,YP_001176939.1,DNA polymerase V subunit UmuD,binds with UmuC protein to form functional DNA pol V (UmuD'2UmuC); involved in translesion polymerization
 , , , , , , , , , ,umuC,2404502,2403234,Reverse,Ent638_2212,YP_001176938.1,DNA polymerase V subunit UmuC,binds processed UmuD protein to form functional DNA pol V (UmuD'2UmuC); involved in translesion polymerization
 , , , , , , , , , ,null,2403182,2402055,Reverse,Ent638_2211,YP_001176937.1,SecC motif-containing protein,PFAM: SEC-C motif domain protein; KEGG: pcr:Pcryo_2158 hypothetical protein
@,2818362,23.087429445259737,Forward,CTACTGTATATATAGACAGTAA,Intergenic,Operator,306,53,Down,null,2818415,2818849,Forward,Ent638_2620,YP_001177338.1,putative phage repressor,PFAM: peptidase S24, S26A and S26B; KEGG: ecv:APECO1_2045 putative regulatory protein
 , , , , , , , , ,Up,null,2818056,2817844,Reverse,Ent638_2619,null,null,null
 , , , , , , , , , ,null,2817776,2817306,Reverse,Ent638_2618,YP_001177337.1,hypothetical protein,KEGG: hit:NTHI1722 hypothetical protein
 , , , , , , , , , ,null,2817242,2816904,Reverse,Ent638_2617,YP_001177336.1,hypothetical protein,null
 , , , , , , , , , ,null,2816894,2815974,Reverse,Ent638_2616,YP_001177335.1,hypothetical protein,KEGG: yps:YPTB1793 hypothetical protein
@,866499,22.965541430660885,Forward,TTACTGTATACTTATCCAGTAA,Operator,Operator,249,38,Down,null,866537,867595,Forward,Ent638_0762,YP_001175499.1,DNA polymerase IV,involved in translesion DNA polymerization with beta clamp of polymerase III; belongs to Y family of polymerases; does not contain proofreading function
 , , , , , , , , ,Up,null,866250,865510,Reverse,Ent638_0761,YP_001175498.1,hypothetical protein,PFAM: protein of unknown function DUF949; KEGG: stm:STM0312 putative periplasmic protein
@,2405434,22.50624670950423,Forward,CAACTGTATGTATATACAGCAT,None,Operator,0,63,Down,null,2405497,2406780,Forward,Ent638_2214,YP_001176940.1,hypothetical protein,KEGG: pau:PA14_59220 pyocin S5
 , , , , , , , , ,Up
@,1809262,22.385079501835623,Forward,TAACTGTTTTTATATACAGCAT,Operator,None,12,0,Down
 , , , , , , , , ,Up,null,1809250,1809011,Reverse,Ent638_1656,YP_001176386.1,DinI family protein,PFAM: DinI family protein; KEGG: stm:STM1241 Macrophage survival gene; reduced mouse virulence
@,1728772,22.28182372437695,Forward,GTACTGTTTATTTATACAGTCA,Operator,None,19,0,Down
 , , , , , , , , ,Up,null,1728753,1728508,Reverse,Ent638_1575,YP_001176305.1,DinI family protein,PFAM: DinI family protein; KEGG: stm:STM1162 DNA damage-inducible protein I
@,308863,21.974248078570806,Forward,GACCTGTTTGAATATACAGTAT,Operator,Operator,80,166,Down,null,309029,309559,Forward,Ent638_0262,YP_001175002.1,single-stranded DNA-binding protein,binds to single stranded DNA and PriA helcase facilitate replication restart
 , , , , , , , , ,Up,uvrA,308783,305961,Reverse,Ent638_0261,YP_001175001.1,excinuclease ABC subunit A,The UvrABC repair system catalyzes the recognition and processing of DNA lesions. UvrA is an ATPase and a DNA-binding protein. A damage recognition complex composed of 2 uvrA and 2 uvrB subunits scans DNA for abnormalities. When the presence of a lesion has been verified by uvrB, the uvrA molecules dissociate
@,1866600,21.675766487617974,Forward,AAACTGTCAATTCATACAGTAT,Operator,None,14,0,Down
 , , , , , , , , ,Up,null,1866586,1865996,Reverse,Ent638_1715,YP_001176445.1,hypothetical protein,PFAM: membrane-bound metal-dependent hydrolase; KEGG: sdy:SDY_1821 hypothetical protein
@,686605,21.598355556577207,Forward,ATGCTGGGATTTTATACAGGTA,Isolated,Isolated,0,0,Down
 , , , , , , , , ,Up,null,686655,684193,Reverse,Ent638_0607,YP_001175345.1,DNA polymerase II,Has polymerase, DNA-binding and 3'-5' exonuclease activities. In Aeropyrum pernix this protein is sensitive to aphidicolin and stable at 95#C
@,2782446,21.351749715544713,Forward,TTACTGTGTATTTATACACTAT,Operator,None,15,0,Down
 , , , , , , , , ,Up,null,2782431,2781958,Reverse,Ent638_2577,YP_001177297.1,DNA gyrase inhibitor,PFAM: transcription activator, effector binding; KEGG: ecs:ECs2811 SbmC protein
@,3371012,21.10099901740022,Forward,TTACTGTATAAAAAACCAGTTT,None,Operator,0,69,Down,null,3371081,3372742,Forward,Ent638_3096,YP_001177811.1,recombination and repair protein,TIGRFAM: DNA repair protein RecN; PFAM: SMC domain protein; KEGG: stt:t2638 DNA repair protein
 , , , , , , , , ,Up
@,1416505,20.96971276335692,Forward,ATAGTGGCTGTTTATACAGTAT,None,Operator,0,35,Down,dinG,1416540,1418717,Forward,Ent638_1289,YP_001176021.1,ATP-dependent DNA helicase DinG,helicase involved in DNA repair and perhaps also replication
 , , , , , , , , , ,null,1418782,1419747,Forward,Ent638_1290,YP_001176022.1,glycosyl transferase family protein,PFAM: glycosyl transferase, family 3; KEGG: ssn:SSO_0779 putative enzyme
 , , , , , , , , ,Up
@,4292669,20.722406371847136,Forward,GTGCTGTATAAACGTCCAGTTT,Operator,None,43,0,Down
 , , , , , , , , ,Up,null,4292626,4291169,Reverse,Ent638_3961,YP_001178667.1,DNA recombination protein RmuC,YigN; nuclease that may cleave DNA structures arising during the recombination of short-inverted repeats and thereby prevents the inversion of the internal sequence; transcription is induced by DNA-damaging agents such as nalidixic acid or mitomycin C in a LexA-dependent manner
 , , , , , , , , , ,ubiE,4291102,4290347,Reverse,Ent638_3960,YP_001178666.1,ubiquinone/menaquinone biosynthesis methyltransferase,Catalyzes the carbon methylation reaction in the biosynthesis of ubiquinone
 , , , , , , , , , ,null,4290333,4289728,Reverse,Ent638_3959,YP_001178665.1,hypothetical protein,PFAM: protein of unknown function DUF1243; KEGG: sbo:SBO_3848 hypothetical protein
@,4314453,20.36777545791489,Forward,ATACTGTTGATTTATACAATAC,Operator,None,48,0,Down
 , , , , , , , , ,Up,uvrD,4314405,4312243,Reverse,Ent638_3979,YP_001178685.1,DNA-dependent helicase II,unwinds DNA duplexes with 3' to 5' polarity with respect to the bound strand and initiates unwinding most effectively when a single-stranded region is present; involved in the post-incision events of nucleotide excision repair and methyl-directed mismatch repair.
@,2441344,20.2625483026969,Forward,TAACTGTACATTTATACAGTGC,Operator,None,18,0,Down
 , , , , , , , , ,Up,null,2441326,2441093,Reverse,Ent638_2256,YP_001176978.1,DinI family protein,PFAM: DinI family protein; KEGG: sec:SC2624 Gifsy-1 prophage DinI
 , , , , , , , , , ,null,2441028,2440810,Reverse,Ent638_2255,null,null,null
@,26786,20.00682007521858,Forward,ATACTGTATGCATGAACAGGTA,Intergenic,None,359,0,Down
 , , , , , , , , ,Up,null,26427,25981,Reverse,Ent638_0024,YP_001174765.1,GCN5-related N-acetyltransferase,PFAM: GCN5-related N-acetyltransferase; KEGG: mlo:mll2713 hypothetical protein
@,2047446,19.575483028834014,Forward,GCACTGTAATTATATACAGTGT,Operator,None,13,0,Down
 , , , , , , , , ,Up,null,2047433,2047116,Reverse,Ent638_1887,YP_001176615.1,YebG family protein,PFAM: YebG family protein; KEGG: sdy:SDY_1134 hypothetical protein
@,1475838,19.571095892816487,Forward,TAACTGTATATATGAACAGTGG,Operator,None,31,0,Down
 , , , , , , , , ,Up,null,1475807,1474788,Reverse,Ent638_1340,YP_001176072.1,phage integrase family protein,PFAM: phage integrase family protein; KEGG: stt:t3400 probable bacteriophage integrase
@,2437754,19.230788259975952,Forward,GCACTGTTTATTTTTACAGTAT,Isolated,Isolated,0,0,Down
 , , , , , , , , ,Up,null,2437782,2436736,Reverse,Ent638_2250,YP_001176973.1,DNA methylase N-4/N-6 domain-containing protein,PFAM: DNA methylase N-4/N-6 domain protein; KEGG: eci:UTI89_C5110 hypothetical protein
 , , , , , , , , , ,null,2438123,2437932,Reverse,Ent638_2251,YP_001176974.1,lipoprotein,KEGG: ecs:ECs1779 hypothetical lipoprotein
@,1398672,18.718087424276817,Forward,CCACTGGATTTACATCCAGTAT,None,Operator,0,96,Down,null,1398768,1400789,Forward,Ent638_1271,YP_001176003.1,excinuclease ABC subunit B,The UvrABC repair system catalyzes the recognition and processing of DNA lesions. The beta-hairpin of the Uvr-B subunit is inserted between the strands, where it probes for the presence of a lesion
 , , , , , , , , ,Up
@,1616268,16.91090787668961,Forward,AAGCTGGTGACATATCCAGGAA,Isolated,Isolated,0,0,Down
 , , , , , , , , ,Up
@,2623200,16.41579628067532,Forward,AGGCTGGATGTTTATCCAGCCT,Operator,None,49,0,Down
 , , , , , , , , ,Up,ruvA,2623151,2622540,Reverse,Ent638_2430,YP_001177150.1,Holliday junction DNA helicase RuvA,plays an essential role in ATP-dependent branch migration of the Holliday junction
 , , , , , , , , , ,ruvB,2622531,2621521,Reverse,Ent638_2429,YP_001177149.1,Holliday junction DNA helicase RuvB,promotes strand exchange during homologous recombination; RuvAB complex promotes branch migration; RuvABC complex scans the DNA during branch migration and resolves Holliday junctions at consensus sequences; forms hexameric rings around opposite DNA arms; requires ATP for branch migration and orientation of RuvAB complex determines direction of migration
@,1009161,16.295709371608215,Forward,AAACTGGGTATTAATCCAGACT,Isolated,Isolated,0,0,Down
 , , , , , , , , ,Up
@,3496160,16.215657220645177,Forward,TTACTGGCATTTTATACAGGCA,Operator,Operator,128,60,Down,null,3496220,3496450,Forward,Ent638_3210,YP_001177925.1,hypothetical protein,KEGG: plu:plu3591 hypothetical protein
 , , , , , , , , ,Up,null,3496032,3495682,Reverse,Ent638_3209,YP_001177924.1,hypothetical protein,KEGG: ecp:ECP_2696 hypothetical protein YgbA
@,2695871,16.033202235228053,Forward,ATACTGTTTTTTAAAACATGTT,Isolated,Isolated,0,0,Down
 , , , , , , , , ,Up
@,1854683,15.825081089629744,Forward,ATACTGTTCAGCTATACAGTGT,Operator,None,13,0,Down
 , , , , , , , , ,Up,null,1854670,1853792,Reverse,Ent638_1703,YP_001176433.1,nucleotide excision repair endonuclease,3' incision activity; acts with UvrC
@,2479195,15.712443909979964,Forward,TTACTGGTTTTATAACCAGCCT,Operator,None,26,0,Down
 , , , , , , , , ,Up,null,2479169,2477535,Reverse,Ent638_2302,YP_001177022.1,extracellular solute-binding protein,PFAM: extracellular solute-binding protein, family 5; KEGG: ecc:c1707 periplasmic oligopeptide-binding protein precursor
@,1845916,15.70481585230105,Forward,TTGCTGTAAAAATATTCACTTA,Operator,Operator,240,194,Down,null,1846110,1847330,Forward,Ent638_1696,YP_001176426.1,bifunctional succinylornithine transaminase/acetylornithine transaminase,catalyzes the transamination of 2-N-succinylornithine and alpha-ketoglutarate into 2-N-succinylglutamate semialdehyde and glutamate; also functions as the catabolic acetylornithine aminotransferase catalyzing the formation of 2-N-acetylglutamate semialdehyde and glutamate from 2-N-acetylornithine and alpha-ketoglutarate
 , , , , , , , , ,Up,null,1845676,1844870,Reverse,Ent638_1695,YP_001176425.1,exonuclease III,removes the damaged DNA at cytosines and guanines by cleaving on the 3' side of the AP site by a beta-elimination reaction
 , , , , , , , , , ,null,1844827,1844183,Reverse,Ent638_1694,YP_001176424.1,pyridine nucleotide-disulphide oxidoreductase dimerisation region,KEGG: sal:Sala_2701 pyridine nucleotide-disulphide oxidoreductase dimerisation region
 , , , , , , , , , ,null,1844170,1842998,Reverse,Ent638_1693,YP_001176423.1,putative ABC transporter solute-binding protein,KEGG: ssn:SSO_1403 hypothetical protein
@,1533851,15.70139571829526,Forward,TTGCTGGATGGATTCACAGTAA,None,Operator,0,112,Down,null,1533963,1534406,Forward,Ent638_1400,YP_001176132.1,hypothetical protein,null
 , , , , , , , , ,Up
@,1319282,15.524110990343829,Forward,AACCTGGGATATTGTACAGGTC,Operator,None,180,0,Down
 , , , , , , , , ,Up,fur,1319102,1318656,Reverse,Ent638_1198,YP_001175930.1,ferric uptake regulator,negatively regulates a number of operons that encode enzymes involved in iron transport; activated by manganese; forms a homodimer
@,618727,15.353805136195856,Forward,GAACAGTATGTTTAAACAGCTT,Operator,Operator,100,7,Down,null,618734,619633,Forward,Ent638_0551,YP_001175289.1,LysR family transcriptional regulator,PFAM: regulatory protein, LysR; LysR, substrate-binding; KEGG: eca:ECA3903 LysR-family transcriptional activator
 , , , , , , , , ,Up,null,618627,617626,Reverse,Ent638_0550,YP_001175288.1,alcohol dehydrogenase,PFAM: Alcohol dehydrogenase, zinc-binding domain protein; Alcohol dehydrogenase GroES domain protein; KEGG: yen:YE0581 putative oxidoreductase
@,3896799,15.05357369570983,Forward,GTGCTGTCTATTCATCAAGTTA,None,Intragenic,0,426,Down,null,3896373,3897368,Forward,Ent638_3595,YP_001178304.1,peptidase U32,PFAM: peptidase U32; KEGG: ssn:SSO_3304 putative collagenase
 , , , , , , , , ,Up
@,1855879,15.038787501978774,Forward,ATGCTGGCGGGTTGTACAGCTT,Operator,Operator,295,48,Down,null,1855831,1856175,Forward,Ent638_1705,YP_001176435.1,DNA-binding transcriptional activator OsmE,osmotically-inducible lipoprotein E; activator of ntr-like gene protein
 , , , , , , , , ,Up,nadE,1855584,1854757,Reverse,Ent638_1704,YP_001176434.1,NAD synthetase,catalyzes the formation of nicotinamide adenine dinucleotide (NAD) from nicotinic acid adenine dinucleotide (NAAD) using either ammonia or glutamine as the amide donor and ATP; ammonia-utilizing enzymes include the ones from Bacillus and Escherichia coli while glutamine-utilizing enzymes include the Mycobacterial one; forms homodimers
 , , , , , , , , , ,null,1854670,1853792,Reverse,Ent638_1703,YP_001176433.1,nucleotide excision repair endonuclease,3' incision activity; acts with UvrC
@,2784843,14.981049706192103,Forward,TTACTGTATGAAAACACAGTGG,None,Operator,0,7,Down,null,2784850,2786175,Forward,Ent638_2579,YP_001177299.1,hypothetical protein,KEGG: pau:PA14_59220 pyocin S5
 , , , , , , , , ,Up
@,2693147,14.909676126788082,Forward,TTACTGTTTATACTGTCAGTTA,Isolated,Isolated,0,0,Down
 , , , , , , , , ,Up,null,2693544,2693326,Reverse,Ent638_2497,YP_001177217.1,cold-shock DNA-binding protein family protein,PFAM: Cold-shock protein, DNA-binding; SMART: Cold shock protein; KEGG: ecj:JW1549 cold shock protein
@,1728331,14.85551302908436,Forward,ATGCAGGTGAAATAAACAGGTC,Operator,None,93,0,Down
 , , , , , , , , ,Up,bssS,1728238,1727984,Reverse,Ent638_1574,YP_001176304.1,biofilm formation regulatory protein BssS,BssS; regulator of biofilm through signal secretion; disruption of this gene in Escherichia coli led to effects on biofilm formation, alteration in expression of a number of genes and mutations in bssS led to defects in indole transport and autoinducer-2 uptake and processing
 , , , , , , , , , ,null,1728753,1728508,Reverse,Ent638_1575,YP_001176305.1,DinI family protein,PFAM: DinI family protein; KEGG: stm:STM1162 DNA damage-inducible protein I
@,837749,14.66811114606881,Forward,AAAGTGTTAGTTCGTACAGGTA,None,Intragenic,0,453,Down,null,837296,837856,Forward,Ent638_0738,YP_001175476.1,D,D-heptose 1,7-bisphosphate phosphatase,Converts the D-glycero-beta-D-manno-heptose 1,7-bisphosphate intermediate into D-glycero-beta-D-manno-heptose 1-phosphate
 , , , , , , , , , ,null,838233,839777,Forward,Ent638_R0019,null,16S ribosomal RNA,null
 , , , , , , , , , ,null,839845,839921,Forward,Ent638_R0020,null,tRNA-Ile,tRNA-Ile1
 , , , , , , , , ,Up
@,620672,14.565679601999545,Forward,CTCCTGGTGGGATAAACAGTTC,Isolated,Isolated,0,0,Down
 , , , , , , , , ,Up
@,1142336,14.461740176743273,Forward,ATGCTGGATGGAAATCCGTTTA,None,Intergenic,0,438,Down,null,1142774,1143211,Forward,Ent638_1041,YP_001175774.1,hypothetical protein,null
 , , , , , , , , , ,null,1143214,1143792,Forward,Ent638_1042,YP_001175775.1,hypothetical protein,null
 , , , , , , , , ,Up
@,3193061,14.391342193796277,Forward,TTGCTGTTTTTTCGAACATTTC,Operator,Operator,130,101,Down,null,3193162,3193923,Forward,Ent638_2941,YP_001177656.1,putative sulfate transport protein CysZ,putative role in sulfur assimilation
 , , , , , , , , ,Up,null,3192931,3191978,Reverse,Ent638_2940,YP_001177655.1,cell division protein ZipA,interacts with cell division protein FitsZ and may be required to anchor septal ring structure
 , , , , , , , , , ,ligA,3191910,3189895,Reverse,Ent638_2939,YP_001177654.1,NAD-dependent DNA ligase LigA,this protein catalyzes the formation of phosphodiester linkages between 5'-phosphoryl and 3'-hydroxyl groups in double-stranded DNA using NAD as a coenzyme and as the energy source for the reaction; essential for DNA replication and repair of damaged DNA; similar to ligase LigB
 , , , , , , , , , ,null,3189893,3189678,Reverse,Ent638_2938,YP_001177653.1,hypothetical protein,KEGG: sdy:SDY_2607 Z3676 gene product
@,2784105,14.382409731460157,Forward,GAACTGGTTATTAAAACAGTGG,Intergenic,None,358,0,Down
 , , , , , , , , ,Up,dacD,2783747,2782563,Reverse,Ent638_2578,YP_001177298.1,D-alanyl-D-alanine carboxypeptidase,removes C-terminal D-alanyl residues from sugar-peptide cell wall precursors; penicillin-binding protein 6B; one of four, DD-carboxypeptidase low-molecular weight penicillin-binding proteins that remove terminal D-alanine from pentapeptide side chains
@,4490038,14.273014428045954,Forward,TTAGTGTGTTAAAAAACAGCAT,Isolated,Isolated,0,0,Down
 , , , , , , , , ,Up
@,2760323,14.179566278410203,Forward,GAACTGGCTGGATATTCAGGAC,Intergenic,Intragenic,477,443,Down,null,2759880,2760734,Forward,Ent638_2561,YP_001177281.1,hypothetical protein,PFAM: protein of unknown function DUF980; KEGG: ssn:SSO_2035 hypothetical protein
 , , , , , , , , ,Up,null,2759846,2759751,Reverse,Ent638_R0052,null,tRNA-OTHER,tRNA-OTHER1
@,1873190,14.154120185910521,Forward,TCTCTTTATGAATATACAGGAT,None,Intergenic,0,460,Down,null,1873650,1875578,Forward,Ent638_1724,YP_001176454.1,threonyl-tRNA synthetase,catalyzes the formation of threonyl-tRNA(Thr) from threonine and tRNA(Thr); catalyzes a two-step reaction, first charging a threonine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA
 , , , , , , , , ,Up
@,126240,14.115019606262521,Forward,GTCCTGATAATTTGTCCAGTTA,Intergenic,None,424,0,Down
 , , , , , , , , ,Up,null,125816,124182,Reverse,Ent638_0108,YP_001174849.1,sulfatase,PFAM: sulfatase; KEGG: nme:NMB2010 YhbX/YhjW/YijP/YjdB family protein
@,2724136,13.96399040093916,Forward,TGGCAGTAAGCATATACAGGAT,None,Operator,0,268,Down,null,2724404,2725891,Forward,Ent638_2526,YP_001177246.1,cytoplasmic alpha-amylase,converts 1,4-alpha-D-glucans to maltodextrin
 , , , , , , , , , ,fliS,2723565,2723975,Forward,Ent638_2524,YP_001177244.1,flagellar protein FliS,flagellin specific chaperone
 , , , , , , , , ,Up
@,2618637,13.914571638606528,Forward,TTGCAGTTTTGTCATCCAGTTC,Isolated,Isolated,0,0,Down
 , , , , , , , , ,Up,null,2618907,2617588,Reverse,Ent638_2425,YP_001177145.1,hypothetical protein,PFAM: Peptidoglycan-binding LysM; peptidase M23B; Opacity-associated protein A; Opacity-associated protein A, N-terminal domain protein; KEGG: stm:STM1890 putative peptidase
@,4246308,13.90469746584306,Forward,CGGCTGGAAGGTAATACAGTTA,Isolated,Isolated,0,0,Down
 , , , , , , , , ,Up
@,4340339,13.888208229616197,Forward,GTCCTGGAAGTATAACCATGAA,Operator,None,7,0,Down
 , , , , , , , , ,Up,null,4340332,4339211,Reverse,Ent638_4002,YP_001178708.1,undecaprenyl-phosphate alpha-N-acetylglucosaminyl 1-phosphatetransferase,TIGRFAM: undecaprenyl-phosphate alpha-N-acetylglucosaminyl 1-phosphatetransferase; PFAM: glycosyl transferase, family 4; KEGG: ssn:SSO_3956 UDP-GlcNAc:undecaprenylphosphate GlcNAc-1-phosphate transferase
 , , , , , , , , , ,null,4339197,4338151,Reverse,Ent638_4001,YP_001178707.1,lipopolysaccharide biosynthesis protein WzzE,Enterobacterial Common Antigen (ECA) polysaccharide chain length modulation protein
 , , , , , , , , , ,null,4338094,4336964,Reverse,Ent638_4000,YP_001178706.1,UDP-N-acetylglucosamine 2-epimerase,PFAM: UDP-N-acetylglucosamine 2-epimerase; KEGG: ecc:c4706 UDP-N-acetylglucosamine 2-epimerase
